PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000249.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 336aa    MW: 37458.9 Da    PI: 5.3475
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000249.1_g00010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1864112355
                      AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Itr_sc000249.1_g00010.1  64 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 112
                              56******.**********965...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.57463120IPR001471AP2/ERF domain
SMARTSM003801.0E-3063126IPR001471AP2/ERF domain
CDDcd000182.52E-2863119No hitNo description
PRINTSPR003671.2E-76475IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.2E-2864119IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2064120IPR016177DNA-binding domain
PfamPF008472.8E-1166112IPR001471AP2/ERF domain
PRINTSPR003671.2E-786102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSSSNTSPSQ QHHHHHQQQQ QQQPFSLFEP IRTPTGFSWL QRNTAVAQPS EKRGRRKQAE  60
PGRFLGVRRR PWGRYAAEIR DPTTKERHWL GTFDTAQEAA LAYDRAALSM KGAQARTNFI  120
YTTDSCYTTN TNNPFDLHPQ NSSYSSSPPF ILTCTPEKKP AAAPPPPVSS SPPLLGQSDN  180
ETCSQSSYGS SPQENSLFFS PHEEDNSGYL DCIVPDTILR PPNTTTTISQ ETNESGNYYT  240
TPQNLPWFWE GQQSWDMMNS CDDLSAILNN NNNNKSSMSY EVRNACMGME NDEKPAIIGS  300
FDKVMMMQGG GEGASSSTTT CSYAYGDAND YGYSLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1864119359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009588287.15e-85PREDICTED: ethylene-responsive transcription factor ERF086
RefseqXP_016434973.15e-85PREDICTED: ethylene-responsive transcription factor ERF086-like
SwissprotQ6J9Q21e-61ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A068TS677e-76A0A068TS67_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000583564e-67(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.15e-60ERF family protein